How to Recover from a Bad Batch of Epoxy:
1. Determine the extent and acuteness of the problem.
You've done this. It doesn't seem too awful. Pulling out as much bad stuff as you can is a good move if practical.
There are shades of Bad Batches, from Just a Little Bit Off (basically don't worry about it; skip to #2) to The Epoxy is Oozing Onto the Floor 24 Hours Later (you're screwed; skip to #3).
What you do next depends on where you fall on that spectrum. From what you've said, you fall closer to Just a Little Bit Off. Proceed to #2.
2. Apply fresh epoxy and lots of HEAT.
If the epoxy is gummy, up to something like half-cured, the application of properly mixed and activated epoxy on top of the bad stuff will help it along. (As Laszlo observed, applying only resin or only hardener will exacerbate any problems.)
Then get the affected area really warm. Up into the 80's or 90's F or more. Epoxy requires an exothermic---heat-generating---reaction, which is why it stops working much under room temperature. Conversely, if you heat it up, it cures more quickly and more completely. Epoxy that's just a little off can be saved sometimes by cooking it.
Drape sheet plastic over the project and use incandescent light bulbs and/or a small space heater to create an oven or autoclave. Bake the parts for 24 hours, then let it cool down to room temperature over a few hours. I've saved bad mixes this way and gotten full-strength cures.
3. What to do if the epoxy fails completely?
I've had this happen dozens of times. This is where you come in the next day and the epoxy is still liquid. No amount of heat or over-coating with good epoxy is going to save you.
Do whatever you have to do to go backwards a step and get the bad stuff off. This means disassembling parts or (heaven forfend) peeling off fiberglass.
You're now left with surfaces that are badly contaminated with either resin or hardener. Time to bring out the big gun: a jug of lacquer thinner. This is very nasty stuff. You need to be outdoors or have outdoors-like ventilation, a charcoal respirator, and industrial-strength chemical handling gloves. Scrub the surfaces and get as much goo off as you can.
A REALLY bad batch of epoxy can stain the wood; there's probably no fix for that. But after a couple of vigorous lacquer thinner scrubs you can get a fresh start and get complete bonds.
4. Don't mistake a bad mix for shop temperature issues.
If you come back to the shop the next day and your epoxy is still gooey, don't automatically assume something is wrong with the epoxy. In North America, six months of the year, I find that shops just aren't warm enough for the epoxy to activate.
Read this article about epoxy and cold weather!
The shop needs to be above 60 degrees F, and the surfaces you're epoxying need to be above 60 degrees F. And they need to stay that way until the epoxy has cured. I find that a lot of supposed bad mixes turn out to be the result of shops that are 55 degrees when the work was done and 45 overnight.